Hernandez-Jimenez R, Patel A, Machado-Olavarria A, Mathieu H, Guergues J, Wohlfahrt J, Stevens Jr. S, Dharap A (2024). Cellular Resiliency and Survival of Neuro-2a Cells Under Extreme Stress. Experimental Cell Research. doi: 10.1016/j.yexcr.2024.114275. 

(Note: The RNA-seq data for this study is available in NCBI's GEO under the accession number GSE264224. The proteomics data for this study is available in the ProteomeXchange Consortium under the dataset identifier PXD053015)

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Patel A and Dharap A (2024). An emerging role for enhancer RNAs in brain disorders. NeuroMolecular Medicine. doi: 10.1007/s12017-024-08776-3.

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Ruiz D, Bhattarai S and Dharap A (2021). Sex-based eRNA expression and function in ischemic stroke. Neurochemistry International. doi: 10.1016/j.neuint.2021.105149

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Bhattarai S, Akella A, Gandhi A and Dharap A (2020) Modulation of brain pathology by enhancer RNAs in cerebral ischemia. Mol Neurobiol. doi: 10.1007/s12035-020-02194-9

(Note: The RNA-seq data for this study is available in the NCBI GEO under the accession number GSE135480)

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Akella A, Bhattarai S and Dharap A. (2019) Long Noncoding RNAs in the Pathophysiology of Ischemic Stroke. Neuromolecular Med. doi:10.1007/s12017-019-08542-w

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Bhattarai S, Aly A, Garcia K, Ruiz D, Pontarelli F and Dharap A. (2018) Deep sequencing reveals uncharted isoform heterogeneity of the protein-coding transcriptome in cerebral ischemia. Mol Neurobiol. doi:10.1007/s12035-018-1147-0

(Note: Raw RNA-seq data for this study is available in the NCBI GEO under the accession number GSE112348)

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Bhattarai S., Pontarelli F., Prendergast E and Dharap A. (2017) Discovery of novel stroke-responsive lncRNAs in the mouse cortex using genome-wide RNA-seq. Neurobiol Dis. Aug 27 pii: S0969-9961(17)30208-5. doi: 10.1016/j.nbd.2017.08.016.

(Note: Raw RNA-seq data for this study is available in the NCBI GEO under the accession number GSE112348)

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Dharap A., and Vemuganti R. (2017) Noncoding RNAs and Stroke: Primer on Cerebrovascular Diseases, Second Edition (Elsevier). Pages 276-279. Hardcover, ISBN: 978-0-12-803058-5.

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Dharap A, Pokrzywa C, Murali S, Kaimal B and Vemuganti R. (2015) Mutual induction of transcription factor PPARγ and microRNAs miR-145 and miR-329. J Neurochem. Oct;135(1):139-46. doi: 10.1111/jnc.13220. Epub 2015 Jul 23.

 

Mehta SL, Dharap A and Vemuganti R. (2014) Expression of transcribed ultraconserved regions of genome in rat cerebral cortex. Neurochemistry International. doi: 10.1016/j.neuint.2014.06.006

 

Dharap A, Murali S, Pokrzywa C, Pandi G and Vemuganti R. (2013) MicroRNA-324-3p induces promoter- mediated expression of the RelA gene. PLoS One. doi: 10.1371/journal.pone.0079467.

 

Dharap A*, Pokrzywa C and Vemuganti R. (2013) Increased binding of stroke-induced long noncoding RNAs to the transcriptional corepressors Sin3A and coREST. ASN Neuro. doi:pii: e00124. 10.1042/AN20130029. 

*Co-corresponding author (Manuscript identified by Editorial Board to be of special interest. Invited to record podcast on the study).

 

Novikova I, Dharap A, Hennelly S and Sanbonmatsu K. (2013) 3S: Shotgun Secondary Structure determination for long non-coding RNAs. Methods. doi: 10.1016/j.ymeth.2013.07.030.

 

Dharap, A., Nakka, VP and Vemuganti R. (2012) MicroRNAs in the Ischemic Brain: The Fine-Tuning Specialists and Novel Therapeutic Targets. From Target Selection to Clinical Trials. Springer Series in Translational Stroke Research. DOI: 10.1007/978-1-4419-9530-8. Hardcover, ISBN 978-1-4419-9529-2.

 

Pandi G, Nakka VP, Dharap A and Vemuganti R. (2012) MiR-29c down-regulation mediates ischemic cell death by derepressing DNMT3a. PLoS One. doi: 10.1371/journal.pone.0058039.

 

Dharap A, Nakka VP, and Vemuganti, R. (2012) Effect of focal ischemia on long noncoding RNAs. Stroke. 2012 Oct;43(10):2800-2. Epub 2012 Sep 4.

 

Dharap A, Nakka VP, and Vemuganti, R. (2011) Altered expression of piRNAs in rat brain following transient focal ischemia. Stroke. 42:1105-9.

 

Dharap A, Vemuganti, R. (2010) Ischemic preconditioning alters cerebral microRNAs that are upstream to neuroprotective signaling pathways. J. Neurochem doi: 10.1111/j.1471-4159.2010.06735.x.

 

Dharap A, Bowen K, Place RF, Li LC and Vemuganti R. (2009) Transient focal ischemia induces extensive temporal changes in rat cerebral MicroRNAome. J. Cereb. Blood Flow Metab. doi: 10.1038/jcbfm.2008.157